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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
405
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
298
transcription factor
89
recombinant protein
70
control
54
RNA binding protein
34
histone
34
histone modification
20
chromatin remodeller
18
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
95
February, 2021
46
November, 2018
29
October, 2019
15
November, 2019
8
August, 2021
5
January, 2019
5
March, 2020
5
May, 2021
Available data
522
bam
467
bigWig
367
fastq
350
bed narrowPeak
301
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
522
Homo sapiens
Biosample type
1907
tissue
609
primary cell
522
cell line
291
in vitro differentiated cells
3
stem cell
Organ
366
liver
66
artery
66
blood vessel
66
heart
66
vasculature
63
pancreas
60
blood
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
518
AMP
4
T1D
Genome assembly (visualization)
455
hg19
409
GRCh38
Lab
522
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
522 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
5
1
1
smooth muscle cell of the coronary artery
6
52
8
EndoC_BH1
15
33
1
Panc1
13
1
H1-hESC
8
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
2
See all biosamples
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