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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
total RNA-seq
345
ChIP-seq
62
ATAC-seq
17
WGBS
16
small RNA-seq
Assay category
923
Transcription
345
DNA binding
62
DNA accessibility
17
DNA methylation
Target of assay
167
control
154
histone modification
153
histone
135
narrow histone mark
24
transcription factor
18
broad histone mark
3
RNA binding protein
Date released
452
February, 2021
193
May, 2020
148
August, 2017
140
October, 2019
116
July, 2018
62
July, 2019
39
November, 2019
38
May, 2021
29
October, 2018
24
May, 2022
22
May, 2019
15
April, 2019
12
December, 2017
12
November, 2017
9
March, 2020
9
November, 2018
9
October, 2017
6
April, 2018
6
September, 2017
4
December, 2018
1
January, 2019
1
March, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1346
Homo sapiens
Biosample type
1347
tissue
500
primary cell
276
in vitro differentiated cells
227
cell line
3
stem cell
Organ
489
connective tissue
431
adipose tissue
367
pancreas
239
liver
110
brain
66
bone element
44
heart
30
limb
25
blood vessel
25
vasculature
16
nerve
11
kidney
11
spleen
9
artery
8
skeleton
6
musculature of body
1
pituitary gland
Project
1345
AMP
2
T1D
Genome assembly (visualization)
1156
hg19
1148
GRCh38
Lab
1322
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
inconsistent ontology term
Audit category:
22
missing controlled_by
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
1347 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
272
30
38
liver
147
84
1
bone tissue
58
body of pancreas
2
9
4
2
2
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