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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
960
total RNA-seq
722
ChIP-seq
177
DNase-seq
84
RNA microarray
64
ATAC-seq
17
WGBS
16
small RNA-seq
13
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
989
Transcription
722
DNA binding
246
DNA accessibility
17
DNA methylation
Target of assay
466
histone modification
465
histone
243
narrow histone mark
222
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
541
February, 2021
193
May, 2020
186
October, 2019
170
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
57
August, 2021
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
25
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
February, 2023
1
March, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2051
Homo sapiens
Biosample type
2058
tissue
609
primary cell
583
cell line
294
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
440
adipose tissue
429
pancreas
288
liver
226
brain
160
kidney
154
bone element
132
heart
114
limb
87
blood vessel
87
vasculature
45
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
12
skeleton
3
eye
1
pituitary gland
Project
2056
AMP
2
T1D
Genome assembly (visualization)
1703
GRCh38
1649
hg19
Lab
1976
AMP-T2D consortium
57
Katalin Susztak, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
88
inconsistent ontology term
27
inconsistent control
6
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
2058 results
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total RNA-seq
ChIP-seq
DNase-seq
RNA microarray
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
1
38
1
liver
147
122
2
1
kidney
49
27
13
13
1
bone element
84
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