Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
total RNA-seq
607
ChIP-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
923
Transcription
607
DNA binding
245
DNA accessibility
17
DNA methylation
Target of assay
377
histone modification
376
histone
210
narrow histone mark
166
broad histone mark
145
control
85
transcription factor
19
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
186
October, 2019
170
August, 2017
163
June, 2019
116
July, 2018
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1792
bam
1639
bigWig
1076
tsv
851
bed narrowPeak
468
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1785
Homo sapiens
Biosample type
1792
tissue
604
primary cell
582
cell line
291
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
440
adipose tissue
427
pancreas
288
liver
198
brain
111
heart
107
limb
98
kidney
66
bone element
42
nerve
37
blood vessel
37
musculature of body
37
vasculature
29
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1790
AMP
2
T1D
Genome assembly (visualization)
1611
GRCh38
1555
hg19
Lab
1767
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2019
BIOSAMPLE
ASSAY
1792 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
1
38
1
liver
147
122
2
1
bone tissue
58
body of pancreas
2
33
4
4
2
2
+ See 139 more…
See all biosamples
Download