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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
10
ATAC-seq
Assay category
68
DNA binding
10
DNA accessibility
Target of assay
63
control
4
transcription factor
2
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
1
recombinant protein
Date released
46
November, 2017
12
February, 2021
10
October, 2019
4
November, 2018
3
January, 2019
3
November, 2019
Available data
582
bam
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
78
Homo sapiens
Biosample type
223
tissue
78
cell line
48
in vitro differentiated cells
45
primary cell
1
stem cell
Organ
48
liver
10
artery
10
blood vessel
10
heart
10
pancreas
10
vasculature
6
blood
6
bodily fluid
3
epithelium
3
kidney
Project
78
AMP
Genome assembly (visualization)
10
GRCh38
10
hg19
Lab
78
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
ATAC-seq
cell line
HepG2
47
1
smooth muscle cell of the coronary artery
2
8
Panc1
7
GM12878
6
EndoC_BH1
2
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
iPSC derived cell line
1
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