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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
37
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
WGBS
Assay category
398
Transcription
37
DNA binding
3
DNA accessibility
2
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
23
October, 2018
17
August, 2017
12
July, 2019
1
November, 2019
1
October, 2017
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
440
Homo sapiens
Biosample type
438
tissue
2
primary cell
Organ
675
pancreas
618
liver
584
connective tissue
440
adipose tissue
295
epithelium
197
brain
181
heart
168
vasculature
167
blood vessel
98
artery
78
limb
66
bone element
66
kidney
60
blood
60
bodily fluid
40
nerve
36
embryo
24
musculature of body
23
spleen
16
vein
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
440
AMP
Genome assembly (visualization)
421
GRCh38
419
hg19
Lab
440
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
440 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
2
2
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
1
1
white adipose tissue
12
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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