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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
442
ChIP-seq
100
total RNA-seq
10
ATAC-seq
1
WGBS
Assay category
442
DNA binding
100
Transcription
10
DNA accessibility
1
DNA methylation
Target of assay
342
transcription factor
82
recombinant protein
67
control
64
RNA binding protein
30
chromatin remodeller
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
95
February, 2021
61
November, 2018
October, 2019
27
December, 2018
23
January, 2019
15
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
553
bam
502
bigWig
427
fastq
389
bed narrowPeak
347
bigBed narrowPeak
115
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
553
Homo sapiens
Biosample type
1730
tissue
588
primary cell
553
cell line
287
in vitro differentiated cells
3
stem cell
Organ
366
liver
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
49
epithelium
49
pancreas
8
embryo
Project
549
AMP
4
T1D
Genome assembly (visualization)
490
hg19
444
GRCh38
Lab
553
AMP-T2D consortium
Audit category:
49
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
BIOSAMPLE
ASSAY
553 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
cell line
HepG2
359
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
15
33
1
H1-hESC
8
early embryonic cell
2
iPSC derived cell line
2
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