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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
359
ChIP-seq
5
total RNA-seq
1
ATAC-seq
1
WGBS
Assay category
359
DNA binding
5
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
285
transcription factor
82
recombinant protein
56
control
53
RNA binding protein
20
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
46
November, 2018
5
January, 2019
1
February, 2021
Available data
367
fastq
366
bam
332
bigWig
308
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
366
Homo sapiens
Biosample type
366
cell line
289
tissue
15
in vitro differentiated cells
13
primary cell
Organ
366
liver
66
artery
66
blood vessel
66
heart
66
vasculature
63
pancreas
60
blood
60
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
366
AMP
Genome assembly (visualization)
314
hg19
268
GRCh38
Lab
366
AMP-T2D consortium
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
366 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
cell line
HepG2
359
5
1
1
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