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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
total RNA-seq
720
ChIP-seq
176
DNase-seq
63
ATAC-seq
17
WGBS
16
small RNA-seq
9
RRBS
4
FAIRE-seq
Assay category
923
Transcription
720
DNA binding
243
DNA accessibility
26
DNA methylation
Target of assay
464
histone modification
463
histone
241
narrow histone mark
222
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
184
October, 2019
173
August, 2017
162
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
70
July, 2019
69
November, 2017
48
December, 2017
38
May, 2021
38
November, 2019
26
November, 2018
24
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1903
bam
1729
bigWig
1073
tsv
940
bed narrowPeak
560
bigBed narrowPeak
377
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1905
Homo sapiens
Biosample type
1912
tissue
572
primary cell
520
cell line
190
in vitro differentiated cells
3
stem cell
Organ
497
connective tissue
439
adipose tissue
431
pancreas
289
liver
225
brain
133
heart
113
limb
99
kidney
87
blood vessel
87
vasculature
66
bone element
45
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
1910
AMP
2
T1D
Genome assembly (visualization)
1699
GRCh38
1653
hg19
Lab
1887
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
1912 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
RRBS
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
1
38
1
1
liver
147
122
2
1
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
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