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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
804
total RNA-seq
503
ChIP-seq
167
DNase-seq
36
ATAC-seq
16
small RNA-seq
9
WGBS
6
RRBS
2
FAIRE-seq
Assay category
820
Transcription
503
DNA binding
205
DNA accessibility
15
DNA methylation
Target of assay
393
histone
393
histone modification
215
narrow histone mark
178
broad histone mark
100
control
10
transcription factor
8
RNA binding protein
Date released
452
February, 2021
193
May, 2020
186
October, 2019
163
June, 2019
115
May, 2019
114
July, 2018
79
April, 2019
70
July, 2019
69
November, 2017
39
November, 2019
38
May, 2021
16
October, 2018
9
March, 2020
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1543
Homo sapiens
Biosample type
1543
tissue
381
primary cell
157
cell line
155
in vitro differentiated cells
Organ
456
connective tissue
398
adipose tissue
219
pancreas
216
brain
207
liver
133
heart
114
limb
99
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
18
ureter
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
1541
AMP
2
T1D
Genome assembly (visualization)
1424
GRCh38
1364
hg19
Lab
1543
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
1543 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
RRBS
FAIRE-seq
tissue
adipose tissue
381
liver
147
55
1
islet of Langerhans
169
2
19
1
bone tissue
58
heart left ventricle
3
34
3
2
2
1
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