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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
total RNA-seq
715
ChIP-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
9
RRBS
4
FAIRE-seq
Assay category
923
Transcription
715
DNA binding
245
DNA accessibility
26
DNA methylation
Target of assay
460
histone modification
459
histone
241
narrow histone mark
218
broad histone mark
166
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
186
October, 2019
173
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
70
July, 2019
69
November, 2017
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1900
bam
1726
bigWig
1076
tsv
938
bed narrowPeak
555
bigBed narrowPeak
370
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1902
Homo sapiens
Biosample type
1909
tissue
619
primary cell
559
cell line
291
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
440
adipose tissue
431
pancreas
289
liver
227
brain
133
heart
114
limb
99
kidney
87
blood vessel
87
vasculature
66
bone element
46
musculature of body
42
nerve
34
artery
18
ureter
17
spleen
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
1907
AMP
2
T1D
Genome assembly (visualization)
1697
GRCh38
1651
hg19
Lab
1884
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
January, 2019
BIOSAMPLE
ASSAY
1909 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
RRBS
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
1
38
1
1
liver
147
122
2
1
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
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