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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
906
total RNA-seq
695
ChIP-seq
109
DNase-seq
64
ATAC-seq
17
WGBS
15
small RNA-seq
8
RRBS
3
FAIRE-seq
Assay category
921
Transcription
695
DNA binding
176
DNA accessibility
25
DNA methylation
Target of assay
446
histone modification
445
histone
233
narrow histone mark
212
broad histone mark
161
control
88
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
182
October, 2019
173
August, 2017
116
July, 2018
115
May, 2019
95
June, 2019
74
October, 2018
69
November, 2017
66
July, 2019
56
April, 2019
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1809
bam
1641
bigWig
1064
tsv
791
bed narrowPeak
474
bigBed narrowPeak
377
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
95
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
1810
Homo sapiens
Biosample type
1817
tissue
585
primary cell
567
cell line
291
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
440
adipose tissue
431
pancreas
289
liver
227
brain
133
heart
114
limb
kidney
87
blood vessel
87
vasculature
66
bone element
46
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
1815
AMP
2
T1D
Genome assembly (visualization)
1613
GRCh38
1566
hg19
Lab
1792
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
kidney
BIOSAMPLE
ASSAY
1817 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
RRBS
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
1
38
1
1
liver
147
122
2
1
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
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