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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
904
total RNA-seq
715
ChIP-seq
145
DNase-seq
64
ATAC-seq
16
WGBS
15
small RNA-seq
7
RRBS
4
FAIRE-seq
Assay category
919
Transcription
715
DNA binding
213
DNA accessibility
23
DNA methylation
Target of assay
460
histone modification
459
histone
241
narrow histone mark
218
broad histone mark
166
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
186
October, 2019
171
August, 2017
131
June, 2019
116
July, 2018
108
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
67
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
7
December, 2018
7
January, 2019
7
March, 2020
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1863
bam
1715
bigWig
1069
tsv
933
bed narrowPeak
523
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1863
Homo sapiens
Biosample type
1870
tissue
605
primary cell
582
cell line
291
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
440
adipose tissue
431
pancreas
289
liver
227
brain
133
heart
114
limb
99
kidney
87
blood vessel
87
vasculature
66
bone element
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
1868
AMP
2
T1D
Genome assembly (visualization)
1661
GRCh38
1613
hg19
Lab
1845
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
1870 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
RRBS
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
1
38
1
1
liver
147
122
2
1
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
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