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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
898
total RNA-seq
549
ChIP-seq
145
DNase-seq
64
ATAC-seq
16
WGBS
15
small RNA-seq
7
RRBS
6
single cell RNA-seq
4
FAIRE-seq
Assay category
919
Transcription
549
DNA binding
213
DNA accessibility
23
DNA methylation
Target of assay
460
histone modification
459
histone
241
narrow histone mark
218
broad histone mark
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
170
May, 2020
159
August, 2017
159
October, 2019
131
June, 2019
116
July, 2018
87
May, 2019
67
July, 2019
65
April, 2019
57
November, 2017
45
October, 2018
39
November, 2019
38
May, 2021
36
December, 2017
24
May, 2022
23
November, 2018
13
October, 2017
7
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
1
March, 2019
Available data
1715
bigWig
1697
bam
1069
tsv
933
bed narrowPeak
523
bigBed narrowPeak
308
fastq
173
tagAlign
169
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1698
Homo sapiens
Biosample type
1704
tissue
575
primary cell
506
cell line
261
in vitro differentiated cells
2
stem cell
Organ
479
connective tissue
421
adipose tissue
410
pancreas
246
liver
203
brain
117
heart
97
limb
93
kidney
71
blood vessel
71
vasculature
66
bone element
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
1702
AMP
2
T1D
Genome assembly (visualization)
1658
GRCh38
1610
hg19
Lab
1679
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
target.investigated_as!
control
BIOSAMPLE
ASSAY
1704 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
RRBS
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
266
23
1
38
1
6
1
liver
147
82
2
1
1
bone tissue
58
body of pancreas
2
26
4
4
2
2
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