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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
total RNA-seq
555
ChIP-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
9
RRBS
4
FAIRE-seq
Assay category
923
Transcription
555
DNA binding
245
DNA accessibility
26
DNA methylation
Target of assay
466
histone modification
465
histone
243
narrow histone mark
222
broad histone mark
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
170
May, 2020
163
June, 2019
161
August, 2017
159
October, 2019
116
July, 2018
93
May, 2019
70
July, 2019
65
April, 2019
57
November, 2017
45
October, 2018
39
November, 2019
38
May, 2021
36
December, 2017
24
May, 2022
23
November, 2018
13
October, 2017
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
1
March, 2019
Available data
1772
bigWig
1740
bam
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
310
fastq
213
bed broadPeak
202
bed bed3+
186
tagAlign
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1743
Homo sapiens
Biosample type
1749
tissue
587
primary cell
506
cell line
261
in vitro differentiated cells
2
stem cell
Organ
479
connective tissue
421
adipose tissue
410
pancreas
246
liver
203
brain
117
heart
97
limb
93
kidney
71
blood vessel
71
vasculature
66
bone element
45
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
1747
AMP
2
T1D
Genome assembly (visualization)
1700
GRCh38
1654
hg19
Lab
1724
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
control
BIOSAMPLE
ASSAY
1749 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
RRBS
FAIRE-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
272
23
1
38
1
1
liver
147
82
2
1
1
bone tissue
58
body of pancreas
2
26
4
4
2
2
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