Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
27
snATAC-seq
18
ATAC-seq
12
single cell RNA-seq
8
ChIP-seq
6
WGBS
1
pCHi-C
Assay category
557
Transcription
45
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
617
February, 2021
393
November, 2017
288
August, 2017
283
May, 2020
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
88
November, 2018
82
July, 2019
79
April, 2019
76
February, 2023
76
October, 2018
73
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
16
March, 2020
11
September, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
572
bam
559
tsv
551
bigWig
89
txt
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
617
Homo sapiens
Biosample type
452
tissue
95
cell line
48
primary cell
22
in vitro differentiated cells
Organ
451
connective tissue
386
adipose tissue
66
artery
66
blood vessel
66
bone element
66
heart
66
vasculature
32
epithelium
32
pancreas
8
skeleton
6
limb
1
liver
Project
572
AMP
45
HPAP
Genome assembly (visualization)
569
hg19
568
GRCh38
Lab
572
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
27
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
617 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
tissue
adipose tissue
381
bone tissue
58
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
distal epiphysis
1
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
See all biosamples
Download