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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
total RNA-seq
792
ChIP-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
923
Transcription
792
DNA binding
245
DNA accessibility
17
DNA methylation
Target of assay
528
histone modification
527
histone
269
narrow histone mark
258
broad histone mark
175
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
222
August, 2017
193
May, 2020
186
October, 2019
163
June, 2019
116
July, 2018
115
May, 2019
80
November, 2017
79
April, 2019
74
October, 2018
64
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
22
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1970
Homo sapiens
Biosample type
1977
tissue
609
primary cell
582
cell line
305
in vitro differentiated cells
3
stem cell
Organ
506
connective tissue
448
adipose tissue
438
pancreas
308
liver
244
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
59
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1975
AMP
2
T1D
Genome assembly (visualization)
1703
GRCh38
1669
hg19
Lab
1952
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
1977 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
39
1
38
1
liver
147
142
2
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
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