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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
485
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
small RNA-seq
2
ATAC-seq
1
WGBS
Assay category
485
DNA binding
162
Transcription
7
DNA accessibility
1
DNA methylation
Target of assay
322
transcription factor
93
control
82
recombinant protein
67
histone
67
histone modification
57
RNA binding protein
45
narrow histone mark
23
chromatin remodeller
22
broad histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
63
December, 2017
53
November, 2018
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
655
bam
604
bigWig
437
fastq
423
bed narrowPeak
352
bigBed narrowPeak
174
tsv
66
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
655
Homo sapiens
Biosample type
366
cell line
262
tissue
15
in vitro differentiated cells
12
primary cell
Organ
655
liver
522
connective tissue
521
pancreas
425
adipose tissue
288
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
655
AMP
Genome assembly (visualization)
566
hg19
512
GRCh38
Lab
655
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2017
BIOSAMPLE
ASSAY
655 results
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ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
ATAC-seq
WGBS
cell line
HepG2
359
5
1
1
tissue
liver
97
147
2
1
right lobe of liver
10
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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