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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
ChIP-seq
16
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
460
DNA binding
19
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
326
transcription factor
82
recombinant protein
78
control
57
RNA binding protein
53
histone modification
52
histone
29
broad histone mark
23
chromatin remodeller
23
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
May, 2020
63
December, 2017
53
November, 2018
26
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
488
bam
465
fastq
452
bigWig
414
bed narrowPeak
358
bigBed narrowPeak
63
bed broadPeak
63
bigBed broadPeak
36
tagAlign
30
tsv
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
488
Homo sapiens
Biosample type
366
cell line
95
tissue
15
in vitro differentiated cells
12
primary cell
Organ
689
pancreas
593
connective tissue
488
liver
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
488
AMP
Genome assembly (visualization)
415
hg19
369
GRCh38
Lab
488
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
May, 2020
BIOSAMPLE
ASSAY
488 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
359
5
1
1
tissue
liver
72
4
2
1
right lobe of liver
10
2
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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