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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
48
total RNA-seq
17
ATAC-seq
1
DNase-seq
Assay category
140
DNA binding
48
Transcription
18
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
33
transcription factor
29
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
54
August, 2017
43
December, 2017
39
February, 2018
37
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
206
bam
170
bigWig
141
fastq
127
bed narrowPeak
52
tsv
34
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
206
Homo sapiens
Biosample type
1869
tissue
577
cell line
460
primary cell
206
in vitro differentiated cells
3
stem cell
Organ
58
connective tissue
26
embryo
19
epithelium
15
liver
Project
206
AMP
Genome assembly (visualization)
181
GRCh38
180
hg19
Lab
206
AMP-T2D consortium
Audit category:
33
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
May, 2021
BIOSAMPLE
ASSAY
206 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
4
1
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
cardiac precursors (cardiac muscle cell)
19
1
hepatocyte
15
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