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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
31
ChIP-seq
3
small RNA-seq
2
WGBS
Assay category
398
Transcription
31
DNA binding
2
DNA methylation
Target of assay
19
control
12
transcription factor
Date released
386
February, 2021
18
October, 2018
15
August, 2017
12
July, 2019
Available data
441
bam
424
bigWig
401
tsv
43
fastq
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
431
Homo sapiens
Biosample type
429
tissue
2
primary cell
Organ
522
connective tissue
481
pancreas
431
adipose tissue
274
liver
178
epithelium
96
heart
87
vasculature
86
blood vessel
63
artery
58
bone element
38
brain
25
kidney
22
embryo
22
limb
15
nerve
10
musculature of body
10
spleen
7
vein
6
blood
6
bodily fluid
1
eye
1
pericardium
Project
431
AMP
Genome assembly (visualization)
412
GRCh38
410
hg19
Lab
431
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
October, 2017
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
431 results
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total RNA-seq
ChIP-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
1
2
subcutaneous adipose tissue
6
10
1
omental fat pad
4
8
1
white adipose tissue
12
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
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