Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
164
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
106
transcription factor
31
histone
31
histone modification
27
control
25
RNA binding protein
16
narrow histone mark
16
recombinant protein
15
broad histone mark
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
182
fastq
181
bam
152
bigWig
145
bed narrowPeak
123
bigBed narrowPeak
24
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
181
Homo sapiens
Biosample type
74
tissue
61
cell line
43
in vitro differentiated cells
3
stem cell
Organ
116
liver
19
epithelium
15
blood
15
bodily fluid
13
embryo
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
181
AMP
Genome assembly (visualization)
156
GRCh38
148
hg19
Lab
181
AMP-T2D consortium
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
16
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
181 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
tissue
liver
42
2
right lobe of liver
10
1
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
+ See 2 more…
cell line
HepG2
45
1
GM12878
15
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
See all biosamples
Download