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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ATAC-seq
26
total RNA-seq
13
ChIP-seq
3
single cell RNA-seq
Assay category
44
DNA accessibility
29
Transcription
13
DNA binding
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
134
zippedFastqFolder
86
bam
75
bed narrowPeak
54
bigWig
27
fastq
23
tsv
7
txt
2
bedpe bed3+
2
hic
1
bed bed3+
Organism
86
Homo sapiens
Biosample type
63
tissue
15
cell line
5
in vitro differentiated cells
3
primary cell
Organ
78
pancreas
16
epithelium
1
adipose tissue
1
connective tissue
Project
86
AMP
Genome assembly (visualization)
78
hg19
60
GRCh38
Lab
62
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
BIOSAMPLE
ASSAY
86 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
tissue
islet of Langerhans
37
25
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
13
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
pancreatic ductal cell
1
unclassified exocrine cell
1
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