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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
191
DNase-seq
89
total RNA-seq
5
ATAC-seq
2
WGBS
1
FAIRE-seq
Assay category
212
DNA binding
197
DNA accessibility
89
Transcription
2
DNA methylation
Target of assay
122
histone modification
121
histone
63
narrow histone mark
57
broad histone mark
51
transcription factor
39
control
12
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
500
bam
482
bigWig
352
bed narrowPeak
287
fastq
252
bigBed narrowPeak
228
bed broadPeak
220
bed bed3+
202
bigBed broadPeak
89
tsv
85
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
Organism
493
Homo sapiens
Biosample type
333
tissue
113
primary cell
54
in vitro differentiated cells
Organ
172
pancreas
89
connective tissue
81
kidney
49
epithelium
43
musculature of body
35
heart
32
limb
30
brain
28
liver
18
adipose tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
Project
500
AMP
Genome assembly (visualization)
459
GRCh38
439
hg19
Lab
500
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
500 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
22
1
89
1
liver
25
heart
18
muscle of arm
17
pancreas
14
2
+ See 40 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
cardiac fibroblast
5
3
+ See 22 more…
in vitro differentiated cells
adipocyte
53
1
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