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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
44
total RNA-seq
18
small RNA-seq
16
WGBS
9
DNase-seq
6
ATAC-seq
3
FAIRE-seq
3
single cell RNA-seq
Assay category
70
DNA binding
65
Transcription
18
DNA accessibility
16
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
169
bam
165
bigWig
88
fastq
80
bed narrowPeak
75
bigBed narrowPeak
65
tsv
30
bed bedMethyl
30
bigBed bedMethyl
13
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
hdf5
1
csv
Organism
169
Homo sapiens
Biosample type
90
tissue
61
cell line
18
primary cell
Organ
60
liver
21
heart
17
connective tissue
15
blood
15
bodily fluid
15
brain
13
adipose tissue
11
pancreas
9
blood vessel
9
spleen
9
vasculature
7
kidney
5
epithelium
5
musculature of body
3
artery
1
limb
1
pericardium
Project
169
AMP
Genome assembly (visualization)
158
GRCh38
143
hg19
Lab
169
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
169 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
DNase-seq
ATAC-seq
FAIRE-seq
single cell RNA-seq
tissue
liver
4
2
1
2
spleen
6
2
1
body of pancreas
2
2
2
2
heart left ventricle
2
2
2
omental fat pad
4
1
1
+ See 24 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
cardiac atrium fibroblast
1
+ See 10 more…
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