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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
175
ATAC-seq
5
FAIRE-seq
Assay category
1561
DNA binding
1400
Transcription
356
DNA accessibility
17
DNA methylation
Date released
154
June, 2019
45
May, 2020
26
November, 2019
18
February, 2021
18
May, 2022
15
October, 2019
14
September, 2018
13
May, 2021
10
August, 2017
10
August, 2021
10
November, 2018
8
July, 2019
7
October, 2017
5
September, 2017
2
November, 2020
1
March, 2019
Available data
459
bed narrowPeak
356
bam
316
bigWig
208
bigBed narrowPeak
175
bed bed3+
175
bed broadPeak
173
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
3
txt
1
tar
Organism
356
Homo sapiens
Biosample type
213
tissue
113
primary cell
18
in vitro differentiated cells
12
cell line
Organ
80
kidney
75
pancreas
44
limb
42
epithelium
42
heart
35
brain
musculature of body
23
vasculature
21
blood vessel
18
ureter
14
artery
14
connective tissue
8
bone element
8
liver
8
skeleton
5
adipose tissue
4
eye
3
nerve
3
vein
2
spleen
Project
356
AMP
Genome assembly (visualization)
330
hg19
285
GRCh38
Lab
337
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
18
inconsistent ontology term
1
inconsistent replicate
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
356 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
1
38
1
heart
18
brain
14
kidney
13
1
renal cortex interstitium
11
+ See 48 more…
primary cell
monocyte
15
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 48 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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