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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
493
total RNA-seq
10
ATAC-seq
2
ChIP-seq
1
pCHi-C
Assay category
493
Transcription
10
DNA accessibility
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
506
February, 2021
386
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
211
June, 2019
204
October, 2019
164
July, 2018
94
December, 2017
87
November, 2018
79
April, 2019
76
October, 2018
73
July, 2019
72
September, 2018
70
May, 2019
59
November, 2019
50
August, 2021
49
April, 2018
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
15
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
507
tsv
506
bam
495
bigWig
89
txt
45
fastq
11
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
tagAlign
0
vcf
Organism
506
Homo sapiens
Biosample type
452
tissue
29
cell line
22
in vitro differentiated cells
3
primary cell
Organ
451
connective tissue
386
adipose tissue
66
artery
66
blood vessel
66
bone element
66
heart
vasculature
26
epithelium
26
pancreas
8
skeleton
6
limb
1
liver
Project
506
AMP
Genome assembly (visualization)
505
hg19
504
GRCh38
Lab
506
AMP-T2D consortium
Audit category:
44
inconsistent ontology term
1
inconsistent replicate
organ_slims!
vasculature
BIOSAMPLE
ASSAY
506 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
adipose tissue
381
bone tissue
58
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
distal epiphysis
1
+ See 7 more…
cell line
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
primary cell
osteoblast
1
1
1
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