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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
37
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
1
pCHi-C
Assay category
400
Transcription
37
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
23
October, 2018
17
August, 2017
12
July, 2019
2
February, 2020
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
445
Homo sapiens
Biosample type
443
tissue
2
primary cell
Organ
700
pancreas
693
liver
597
connective tissue
445
adipose tissue
327
epithelium
309
heart
257
brain
195
vasculature
190
blood vessel
156
kidney
117
limb
106
artery
66
bone element
60
blood
60
bodily fluid
60
musculature of body
43
nerve
36
embryo
25
spleen
20
vein
18
ureter
12
eye
8
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
445
AMP
Genome assembly (visualization)
423
GRCh38
421
hg19
Lab
445
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
445 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
pCHi-C
tissue
adipose tissue
381
2
2
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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