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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
23
ChIP-seq
3
small RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
398
Transcription
23
DNA binding
4
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
23
October, 2018
August, 2017
12
July, 2019
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
425
bam
408
bigWig
401
tsv
26
fastq
10
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
425
Homo sapiens
Biosample type
423
tissue
2
primary cell
Organ
655
liver
522
connective tissue
521
pancreas
425
adipose tissue
288
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
425
AMP
Genome assembly (visualization)
407
GRCh38
407
hg19
Lab
425
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
425 results
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total RNA-seq
ChIP-seq
small RNA-seq
ATAC-seq
DNase-seq
tissue
adipose tissue
381
omental fat pad
4
11
1
1
2
subcutaneous adipose tissue
6
12
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
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