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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
20
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
Assay category
398
Transcription
20
DNA binding
5
DNA accessibility
Target of assay
19
control
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
18
October, 2018
12
July, 2019
3
August, 2017
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
425
bam
408
bigWig
401
tsv
27
fastq
8
bed narrowPeak
8
tagAlign
5
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
423
Homo sapiens
Biosample type
421
tissue
2
primary cell
Organ
666
pancreas
551
connective tissue
423
adipose tissue
354
liver
308
epithelium
240
brain
193
heart
175
vasculature
171
blood vessel
134
kidney
113
limb
97
artery
66
bone element
56
musculature of body
42
nerve
33
embryo
20
vein
18
ureter
16
spleen
9
blood
9
bodily fluid
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
423
AMP
Genome assembly (visualization)
404
GRCh38
404
hg19
Lab
423
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
423 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
tissue
adipose tissue
381
2
subcutaneous adipose tissue
6
10
1
1
omental fat pad
4
8
1
1
2
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
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