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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
ATAC-seq
1
FAIRE-seq
Assay category
196
DNA binding
33
DNA accessibility
12
Transcription
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
30
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
78
November, 2017
30
June, 2019
28
May, 2019
12
July, 2019
8
October, 2017
2
November, 2018
Available data
241
bam
220
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
20
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
241
Homo sapiens
Biosample type
224
tissue
17
primary cell
Organ
678
liver
624
pancreas
588
connective tissue
439
adipose tissue
293
epithelium
241
brain
199
heart
174
vasculature
169
blood vessel
144
kidney
106
limb
92
artery
60
blood
60
bodily fluid
58
bone element
57
musculature of body
41
nerve
36
embryo
23
spleen
20
vein
18
ureter
7
eye
1
pericardium
1
pituitary gland
Project
241
AMP
Genome assembly (visualization)
213
GRCh38
155
hg19
Lab
241
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
241 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
brain
13
14
1
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
caudate nucleus
14
1
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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