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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
30
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
190
DNA binding
33
DNA accessibility
12
Transcription
Target of assay
164
histone
164
histone modification
103
narrow histone mark
61
broad histone mark
28
control
1
RNA binding protein
1
transcription factor
Date released
83
October, 2019
72
November, 2017
28
June, 2019
28
May, 2019
13
July, 2019
9
October, 2017
2
November, 2018
Available data
235
bam
213
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
26
tsv
15
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
235
Homo sapiens
Biosample type
226
tissue
9
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
235
AMP
Genome assembly (visualization)
209
GRCh38
147
hg19
Lab
235
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
vasculature
BIOSAMPLE
ASSAY
235 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
13
14
1
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
caudate nucleus
14
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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