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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
30
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
35
DNA accessibility
30
DNA binding
12
Transcription
Target of assay
166
histone
histone modification
105
narrow histone mark
61
broad histone mark
30
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
13
July, 2019
8
October, 2019
3
May, 2019
3
October, 2017
2
November, 2018
Available data
77
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
77
Homo sapiens
Biosample type
63
tissue
14
primary cell
Organ
601
liver
559
connective tissue
552
pancreas
441
adipose tissue
224
epithelium
150
heart
114
kidney
114
vasculature
110
blood vessel
82
artery
77
brain
66
bone element
66
limb
59
blood
59
bodily fluid
43
musculature of body
24
embryo
18
nerve
18
spleen
18
ureter
8
skeleton
6
eye
5
vein
1
pericardium
Project
77
AMP
Genome assembly (visualization)
49
GRCh38
41
hg19
Lab
77
AMP-T2D consortium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
77 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
14
2
1
cerebellum (Hemisphere)
1
2
1
1
frontal cortex
2
1
1
1
temporal lobe
2
1
1
caudate nucleus
1
2
+ See 22 more…
primary cell
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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