Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
total RNA-seq
37
ChIP-seq
3
ATAC-seq
2
DNase-seq
2
WGBS
2
small RNA-seq
Assay category
454
Transcription
37
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
444
February, 2021
23
October, 2018
17
August, 2017
10
July, 2019
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
498
bam
481
bigWig
457
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
498
Homo sapiens
Biosample type
498
tissue
59
in vitro differentiated cells
36
primary cell
Organ
498
connective tissue
440
adipose tissue
429
pancreas
288
liver
226
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
498
AMP
Genome assembly (visualization)
479
GRCh38
477
hg19
Lab
498
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
498 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
2
2
bone tissue
58
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
1
2
1
white adipose tissue
12
+ See 2 more…
See all biosamples
Download