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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
14
total RNA-seq
Assay category
19
DNA binding
14
Transcription
Target of assay
10
histone
10
histone modification
7
narrow histone mark
6
control
3
broad histone mark
3
transcription factor
Date released
13
February, 2018
10
December, 2017
8
August, 2021
2
May, 2021
Available data
36
bam
29
bigWig
27
fastq
14
bed narrowPeak
14
tsv
bed bed3+
Organism
33
Homo sapiens
Biosample type
25
in vitro differentiated cells
8
cell line
Organ
670
liver
661
pancreas
573
connective tissue
436
adipose tissue
298
epithelium
211
brain
181
heart
174
vasculature
171
blood vessel
98
artery
78
limb
66
bone element
66
kidney
60
blood
60
bodily fluid
40
nerve
33
embryo
24
musculature of body
23
spleen
18
vein
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
33
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
33
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
total RNA-seq
in vitro differentiated cells
pancreatic endoderm
15
4
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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