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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
10
total RNA-seq
Assay category
13
DNA binding
10
Transcription
Target of assay
6
histone
6
histone modification
5
narrow histone mark
4
control
3
transcription factor
1
broad histone mark
Date released
13
December, 2017
February, 2018
8
August, 2021
2
May, 2021
Available data
23
bam
19
bigWig
14
fastq
10
tsv
8
bed narrowPeak
3
bed bed3+
Organism
23
Homo sapiens
Biosample type
15
in vitro differentiated cells
8
cell line
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
24
spleen
23
embryo
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
23
AMP
Genome assembly (visualization)
19
GRCh38
19
hg19
Lab
23
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
February, 2018
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
total RNA-seq
in vitro differentiated cells
pancreatic endoderm
9
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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