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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
14
total RNA-seq
Assay category
69
DNA binding
14
Transcription
Target of assay
54
transcription factor
13
control
histone
13
histone modification
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
4
broad histone mark
Date released
27
December, 2018
17
January, 2019
15
November, 2018
8
August, 2021
7
December, 2017
7
February, 2018
2
May, 2021
Available data
83
bam
74
fastq
72
bigWig
56
bed narrowPeak
53
bigBed narrowPeak
14
tsv
1
bed bed3+
Organism
83
Homo sapiens
Biosample type
67
cell line
16
in vitro differentiated cells
Organ
602
liver
559
connective tissue
552
pancreas
441
adipose tissue
224
epithelium
150
heart
114
kidney
114
vasculature
110
blood vessel
82
artery
77
brain
66
bone element
66
limb
59
blood
59
bodily fluid
43
musculature of body
24
embryo
18
nerve
18
spleen
18
ureter
8
skeleton
6
eye
5
vein
1
pericardium
Project
83
AMP
Genome assembly (visualization)
71
GRCh38
71
hg19
Lab
83
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent control read length
target.investigated_as!
histone
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
total RNA-seq
cell line
GM12878
59
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
8
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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