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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
159
total RNA-seq
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
510
DNA binding
162
Transcription
3
DNA accessibility
1
DNA methylation
Target of assay
326
transcription factor
101
control
82
recombinant protein
80
histone modification
79
histone
57
RNA binding protein
50
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
63
December, 2017
50
November, 2018
26
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
1
February, 2021
1
March, 2020
Available data
676
bam
617
bigWig
462
fastq
436
bed narrowPeak
353
bigBed narrowPeak
174
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
676
Homo sapiens
Biosample type
366
cell line
285
tissue
15
in vitro differentiated cells
10
primary cell
Organ
681
pancreas
676
liver
584
connective tissue
440
adipose tissue
300
epithelium
211
brain
181
heart
174
vasculature
171
blood vessel
98
artery
78
limb
66
bone element
65
kidney
60
blood
60
bodily fluid
40
nerve
36
embryo
24
musculature of body
23
spleen
18
vein
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
676
AMP
Genome assembly (visualization)
580
hg19
526
GRCh38
Lab
676
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
676 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
359
5
1
1
tissue
liver
122
147
1
right lobe of liver
10
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
Liver fetal (hepatocyte)
1
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