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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
495
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
495
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
324
transcription factor
100
control
82
recombinant protein
68
histone modification
67
histone
55
RNA binding protein
45
narrow histone mark
22
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
53
November, 2018
48
December, 2017
26
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
666
bam
608
bigWig
450
fastq
427
bed narrowPeak
344
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
666
Homo sapiens
Biosample type
366
cell line
288
tissue
in vitro differentiated cells
12
primary cell
Organ
686
pancreas
666
liver
534
connective tissue
442
adipose tissue
293
epithelium
243
brain
210
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
24
spleen
20
vein
18
ureter
8
embryo
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
666
AMP
Genome assembly (visualization)
571
hg19
517
GRCh38
Lab
666
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
666 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
359
5
1
1
tissue
liver
122
147
2
1
right lobe of liver
10
2
1
1
2
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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