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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
524
ChIP-seq
159
total RNA-seq
23
ATAC-seq
5
DNase-seq
3
small RNA-seq
1
Hi-C
1
WGBS
Assay category
524
DNA binding
162
Transcription
28
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
337
transcription factor
101
control
83
histone modification
82
histone
82
recombinant protein
58
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
63
December, 2017
53
November, 2018
26
August, 2017
20
May, 2022
18
August, 2021
8
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
1
February, 2021
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
716
Homo sapiens
Biosample type
380
cell line
308
tissue
15
in vitro differentiated cells
13
primary cell
Organ
716
liver
711
pancreas
601
connective tissue
445
adipose tissue
331
epithelium
247
brain
212
heart
187
vasculature
182
blood vessel
144
kidney
114
limb
102
artery
71
musculature of body
66
bone element
61
blood
61
bodily fluid
42
nerve
37
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
716
AMP
Genome assembly (visualization)
620
hg19
531
GRCh38
Lab
682
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
716 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
WGBS
cell line
HepG2
373
5
1
1
tissue
liver
122
147
20
2
1
right lobe of liver
10
2
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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