Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
169
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
WGBS
Assay category
510
DNA binding
172
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
326
transcription factor
101
control
82
recombinant protein
80
histone modification
79
histone
57
RNA binding protein
50
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
194
May, 2020
63
December, 2017
53
November, 2018
26
August, 2017
13
August, 2021
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
2
March, 2020
1
February, 2020
1
February, 2021
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
693
Homo sapiens
Biosample type
376
cell line
290
tissue
15
in vitro differentiated cells
12
primary cell
Organ
700
pancreas
693
liver
597
connective tissue
445
adipose tissue
327
epithelium
309
heart
257
brain
195
vasculature
190
blood vessel
156
kidney
117
limb
106
artery
66
bone element
60
blood
60
bodily fluid
60
musculature of body
43
nerve
36
embryo
25
spleen
20
vein
18
ureter
12
eye
8
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
693
AMP
Genome assembly (visualization)
585
hg19
531
GRCh38
Lab
684
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
693 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
pCHi-C
WGBS
cell line
HepG2
359
14
1
1
1
tissue
liver
122
147
2
1
1
right lobe of liver
10
3
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
Download