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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
575
ChIP-seq
163
total RNA-seq
41
DNase-seq
11
ATAC-seq
3
small RNA-seq
2
WGBS
Assay category
575
DNA binding
166
Transcription
52
DNA accessibility
2
DNA methylation
Target of assay
326
transcription factor
128
histone modification
127
histone
118
control
82
recombinant protein
64
narrow histone mark
63
broad histone mark
57
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
75
October, 2019
63
December, 2017
53
November, 2018
34
June, 2019
26
August, 2017
8
July, 2019
7
February, 2021
7
May, 2019
5
December, 2019
5
January, 2019
4
August, 2021
1
March, 2020
Available data
795
bam
713
bigWig
533
bed narrowPeak
465
fastq
442
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
795
Homo sapiens
Biosample type
402
tissue
366
cell line
15
in vitro differentiated cells
12
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
795
AMP
Genome assembly (visualization)
681
hg19
627
GRCh38
Lab
795
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
795 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
liver
122
147
2
1
tibial nerve
35
4
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
+ See 9 more…
cell line
HepG2
359
5
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
See all biosamples
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