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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
184
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
transcription factor
101
control
82
recombinant protein
80
histone modification
79
histone
57
RNA binding protein
50
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
193
May, 2020
74
November, 2017
30
December, 2017
22
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
4
November, 2018
2
June, 2019
1
February, 2021
1
March, 2020
Available data
355
bam
289
bigWig
174
tsv
138
fastq
112
bed narrowPeak
86
tagAlign
44
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
355
Homo sapiens
Biosample type
249
tissue
81
cell line
13
in vitro differentiated cells
12
primary cell
Organ
670
pancreas
553
connective tissue
425
adipose tissue
355
liver
308
epithelium
240
brain
199
heart
176
vasculature
172
blood vessel
134
kidney
114
limb
97
artery
66
bone element
57
musculature of body
42
nerve
33
embryo
20
vein
18
spleen
18
ureter
9
blood
9
bodily fluid
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
355
AMP
Genome assembly (visualization)
267
hg19
245
GRCh38
Lab
355
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
355 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
liver
85
147
2
1
right lobe of liver
8
2
1
1
2
cell line
HepG2
74
5
1
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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