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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
18
total RNA-seq
2
DNase-seq
1
ATAC-seq
Assay category
57
DNA binding
18
Transcription
3
DNA accessibility
Target of assay
36
histone
36
histone modification
20
broad histone mark
18
control
16
narrow histone mark
3
transcription factor
Date released
42
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
Available data
78
bam
60
bigWig
41
bed narrowPeak
27
fastq
26
bigBed narrowPeak
19
tsv
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
78
Homo sapiens
Biosample type
42
tissue
28
in vitro differentiated cells
8
cell line
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
78
AMP
Genome assembly (visualization)
60
GRCh38
60
hg19
Lab
78
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
tissue
tibial nerve
35
4
2
1
in vitro differentiated cells
pancreatic endoderm
18
4
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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