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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
19
ATAC-seq
6
total RNA-seq
2
FAIRE-seq
Assay category
41
DNA binding
21
DNA accessibility
6
Transcription
Target of assay
40
control
1
broad histone mark
1
histone
1
histone modification
Date released
24
May, 2022
16
August, 2017
11
October, 2018
7
October, 2019
4
September, 2017
2
November, 2019
1
March, 2019
1
May, 2019
1
May, 2021
1
November, 2018
Available data
114
fastq
80
zippedFastqFolder
68
bam
26
bed narrowPeak
12
bigWig
11
tagAlign
11
tsv
7
bed broadPeak
7
bedpe bed3+
7
hic
6
txt
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
67
Homo sapiens
Biosample type
46
tissue
12
primary cell
9
cell line
1
in vitro differentiated cells
Organ
150
liver
68
pancreas
33
epithelium
29
vasculature
28
blood vessel
28
brain
28
connective tissue
20
heart
19
adipose tissue
18
limb
14
kidney
11
nerve
9
artery
8
spleen
8
vein
7
embryo
6
blood
6
bodily fluid
4
musculature of body
1
eye
Project
68
AMP
Genome assembly (visualization)
635
hg19
GRCh38
Lab
43
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
68 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
FAIRE-seq
tissue
islet of Langerhans
5
19
6
1
body of pancreas
9
pancreas
3
1
endocrine pancreas
2
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
cell line
Panc1
7
EndoC_BH1
2
in vitro differentiated cells
pancreatic PP cell
1
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