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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
74
single cell RNA-seq
61
total RNA-seq
23
ATAC-seq
1
DNase-seq
Assay category
135
Transcription
101
DNA binding
24
DNA accessibility
Target of assay
78
histone
78
histone modification
41
narrow histone mark
37
broad histone mark
21
control
2
transcription factor
1
RNA binding protein
Date released
72
September, 2018
41
August, 2017
37
July, 2018
33
April, 2018
26
February, 2021
15
November, 2019
14
October, 2019
8
May, 2021
5
September, 2017
3
August, 2018
3
March, 2020
2
October, 2018
1
June, 2018
Available data
260
bam
258
fastq
250
bigWig
142
tsv
91
bed narrowPeak
80
zippedFastqFolder
29
bigBed narrowPeak
4
bedpe bed3+
4
hic
3
cool
3
tagAlign
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
260
Homo sapiens
Biosample type
tissue
194
primary cell
63
cell line
3
in vitro differentiated cells
Organ
393
liver
317
epithelium
260
pancreas
98
vasculature
95
connective tissue
93
blood vessel
79
heart
68
artery
60
blood
60
bodily fluid
46
kidney
36
embryo
20
vein
17
brain
13
musculature of body
4
eye
2
adipose tissue
1
pericardium
Project
256
AMP
4
T1D
Genome assembly (visualization)
238
GRCh38
238
hg19
Lab
260
AMP-T2D consortium
Audit category:
54
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
260 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
primary cell
pancreatic beta cell
13
12
10
7
pancreatic alpha cell
13
12
10
6
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
4
5
pancreatic endocrine cell
23
+ See 5 more…
cell line
EndoC_BH1
15
33
1
Panc1
13
1
in vitro differentiated cells
pancreatic PP cell
3
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