Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
32
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
32
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
19
control
17
transcription factor
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
18
October, 2018
17
August, 2017
12
July, 2019
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
437
bam
420
bigWig
401
tsv
39
fastq
8
bed narrowPeak
8
tagAlign
6
bed bed3+
5
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
437
Homo sapiens
Biosample type
435
tissue
2
primary cell
Organ
680
pancreas
624
liver
583
connective tissue
437
adipose tissue
309
epithelium
240
brain
205
heart
180
vasculature
176
blood vessel
141
kidney
114
limb
101
artery
66
bone element
57
musculature of body
50
blood
50
bodily fluid
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
437
AMP
Genome assembly (visualization)
418
GRCh38
416
hg19
Lab
437
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
437 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
2
2
subcutaneous adipose tissue
6
10
1
1
omental fat pad
4
8
1
1
2
white adipose tissue
12
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
See all biosamples
Download