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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
14
total RNA-seq
Assay category
15
DNA binding
14
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
control
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
Available data
29
bam
29
bigWig
20
fastq
14
bed narrowPeak
14
tsv
2
bed bed3+
Organism
29
Homo sapiens
Biosample type
21
in vitro differentiated cells
8
cell line
Organ
647
pancreas
580
liver
565
connective tissue
423
adipose tissue
290
epithelium
213
brain
191
heart
163
vasculature
159
blood vessel
132
kidney
97
limb
93
artery
66
bone element
54
blood
54
bodily fluid
54
musculature of body
31
nerve
29
embryo
18
ureter
18
vein
16
spleen
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
29
AMP
Genome assembly (visualization)
28
GRCh38
28
hg19
Lab
29
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
total RNA-seq
in vitro differentiated cells
pancreatic endoderm
13
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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