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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
36
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
36
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
narrow histone mark
Date released
386
February, 2021
23
October, 2018
16
August, 2017
12
July, 2019
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
441
bam
423
bigWig
401
tsv
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
441
Homo sapiens
Biosample type
439
tissue
2
primary cell
Organ
631
liver
622
pancreas
576
connective tissue
441
adipose tissue
268
epithelium
187
heart
159
vasculature
155
blood vessel
138
brain
129
kidney
100
limb
96
artery
66
bone element
59
blood
59
bodily fluid
51
musculature of body
34
nerve
28
embryo
22
spleen
18
ureter
14
vein
8
skeleton
6
eye
1
pericardium
Project
441
AMP
Genome assembly (visualization)
422
GRCh38
420
hg19
Lab
441
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
441 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
1
1
2
white adipose tissue
12
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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