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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
40
ChIP-seq
6
DNase-seq
3
ATAC-seq
3
small RNA-seq
2
WGBS
Assay category
398
Transcription
40
DNA binding
9
DNA accessibility
2
DNA methylation
Target of assay
20
control
18
transcription factor
6
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
23
October, 2018
17
August, 2017
12
July, 2019
8
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
449
bam
431
bigWig
406
tsv
46
bed narrowPeak
44
fastq
16
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
449
Homo sapiens
Biosample type
443
tissue
6
primary cell
Organ
689
pancreas
599
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
137
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
449
AMP
Genome assembly (visualization)
429
GRCh38
427
hg19
Lab
449
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
449 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
2
2
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
2
1
1
white adipose tissue
12
retina
3
+ See 2 more…
primary cell
retinal pigment epithelial cell
3
1
mesenchymal stem cell of adipose
1
1
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